SNP Profiles of IMC 96 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CT	AA
1._IMC_96	CC	AG	CG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CT	AA
2._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
3._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
4._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
5._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
6._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
7._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
8._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
9._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
10._IMC_96	CT	AG	GG	CT	TT	AA	TT	TT	CC	CT	AA	AA	CT	AA
11._GC-08-255-8-23	CT	AG	GG	CT	TT	AA	TT	TT	CC	CT	AA	AA	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CC	CT	CC	GG	AA	CC	GG	GT	CT	CC	AA
1._IMC_96	TT	AA	GG	CC	CT	CC	GG	AA	CC	GG	GT	CT	CC	AA
2._IMC_96	TT	AA	GG	CT	CT	CC	GG	AA	CC	GG	GG	CT	CC	AA
3._IMC_96	TT	AA	GG	CT	CT	CC	GG	AA	CC	GG	GG	CT	CC	AA
4._IMC_96	TT	AA	GG	CT	CT	CC	GG	AA	CC	GG	GG	CT	CC	AA
5._GC-08-255-8-23	TT	AA	GG	CT	CT	CC	GG	AA	CC	GG	GG	CT	CC	AA
6._GC-08-255-8-23	TT	AA	GG	CT	CT	CC	GG	AA	CC	GG	GG	CT	CC	AA
7._GC-08-255-8-23	TT	AA	GG	CT	CT	CC	GG	AA	CC	GG	GG	CT	CC	AA
8._IMC_96	TT	AA	GG	CT	_	CC	GG	AA	CC	GG	GG	CT	CC	AA
9._GC-08-255-8-23	TT	AA	GG	CT	_	CC	GG	AA	CC	GG	GG	CT	CC	AA
10._IMC_96	CT	AA	CG	CC	CC	GG	GG	AA	CT	CC	GT	CC	AC	AA
11._GC-08-255-8-23	CT	AA	CG	CC	CC	GG	GG	AA	CT	CC	GT	CC	AC	AA

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AA	CT	AG	AC	CC	GT	CC	TT	GG	X_X	X_X	X_X	X_X
1._IMC_96	GG	AA	CT	AG	AC	CC	GT	CC	TT	GG	X_X	X_X	X_X	X_X
2._IMC_96	GG	AA	CC	AG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
3._IMC_96	GG	AA	CC	AG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
4._IMC_96	GG	AA	CC	AG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
5._GC-08-255-8-23	GG	AA	CC	AG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
6._GC-08-255-8-23	GG	AA	CC	AG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
7._GC-08-255-8-23	GG	AA	CC	AG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
8._IMC_96	GG	AA	CC	AG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
9._GC-08-255-8-23	GG	AA	CC	AG	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
10._IMC_96	GG	AA	CT	AA	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X
11._GC-08-255-8-23	GG	AA	CT	AA	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X	X_X

Input profile: IMC_96

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A46 T2

Dapeng Zhang, 2016

1._IMC_96

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D562

Dapeng Zhang, 2016

2._IMC_96

80.3 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8823 6

Dapeng Zhang, 2016

3._IMC_96

80.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8823 5

Dapeng Zhang, 2016

4._IMC_96

80.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8823 2

Dapeng Zhang, 2016

5._IMC_96 GC-08-255-8-23

80.3 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._IMC_96 GC-08-255-8-23

80.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

7._IMC_96 GC-08-255-8-23

80.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

8._IMC_96

79.7 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8823 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._IMC_96 GC-08-255-8-23

79.7 %
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._IMC_96

71.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8823 4

Dapeng Zhang, 2016

11._IMC_96 GC-08-255-8-23

71.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25